Posts Tagged ‘ speed ’

MCMC on the Raspberry Pi

July 7, 2012
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MCMC on the Raspberry Pi

I’ve recently taken delivery of a Raspberry Pi mini computer. For anyone who doesn’t know, this is a low cost, low power machine, costing around 20 GBP (25 USD) and consuming around 2.5 Watts of power (it is powered by micro-USB). This amazing little device can run linux very adequately, and so naturally I’ve been […]

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speed of R, C, &tc.

February 2, 2012
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speed of R, C, &tc.

My Paris colleague (and fellow-runner) Aurélien Garivier has produced an interesting comparison of 4 (or 6 if you consider scilab and octave as different from matlab) computer languages in terms of speed for producing the MLE in a hidden Markov model, using EM and the Baum-Welch algorithms. His conclusions are that matlab is a lot [...]

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Faster Gibbs sampling MCMC from within R

July 31, 2011
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Faster Gibbs sampling MCMC from within R

Introduction This post follows on from the previous post on Gibbs sampling in various languages. In that post a simple Gibbs sampler was implemented in various languages, and speeds were compared. It was seen that R is very slow for iterative simulation algorithms characteristic of MCMC methods such as the Gibbs sampler. Statically typed languages [...]

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