Introduction The Systems Biology Markup Language (SBML) is an XML-based format for representation and exchange of biochemical network models. SBML is supported by most systems biology modelling tools, allowing the export of a model in SBML from one tool and then reading in another tool. Because it offers a standard way of representing biochemical networks … Continue reading Working with SBML using Scala
Overview In the previous post I showed how the rscala package (which has replaced the jvmr package) can be used to call Scala code from within R. In this post I will show how to call R from Scala code. I have previously described how to do this using jvmr. This post is really just … Continue reading Calling R from Scala sbt projects using rscala
Overview In the previous post I showed how the rscala package (which has replaced the jvmr package) can be used to call Scala code from within R. In this post I will show how to call R from Scala code. I have previously described how to do this using jvmr. This post is really just … Continue reading Calling R from Scala sbt projects using rscala
[Update: The CRAN package “jvmr” has been replaced by a new package “rscala”. Rather than completely re-write this post, I’ve just created a github gist containing a new function, breezeInterpreter(), which works similarly to the function breezeInit() in this post. Usage information is given at the top of the gist.] Introduction In the previous post … Continue reading Inlining Scala Breeze code in R using jvmr and sbt
[Update: The CRAN package “jvmr” has been replaced by a new package “rscala”. Rather than completely re-write this post, I’ve just created a github gist containing a new function, breezeInterpreter(), which works similarly to the function breezeInit() in this post. Usage information is given at the top of the gist.] Introduction In the previous post … Continue reading Inlining Scala Breeze code in R using jvmr and sbt
[Update: the jvmr package has been replaced by a new package called rscala. I have a new post which explains it.] Introduction In previous posts I have explained why I think that Scala is a good language to use for statistical computing and data science. Despite this, R is very convenient for simple exploratory data … Continue reading Calling Scala code from R using jvmr
[Update: the jvmr package has been replaced by a new package called rscala. I have a new post which explains it.] Introduction In previous posts I have explained why I think that Scala is a good language to use for statistical computing and data science. Despite this, R is very convenient for simple exploratory data … Continue reading Calling Scala code from R using jvmr
