Blog Archives

New Book: Bayesian Data Analysis in Ecology Using Linear Models with R, BUGS, and Stan

April 20, 2015
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New Book: Bayesian Data Analysis in Ecology Using Linear Models with R, BUGS, and Stan

Fränzi and Tobias‘s book is now real: Fränzi Korner-Nievergelt, Tobias Roth, Stefanie von Felten, Jérôme Guélat, Bettina Almasi, and Pius Korner-Nievergelt (2015) Bayesian Data Analysis in Ecology Using Linear Models with R, BUGS, and Stan. Academic Press. This is based in part on the in-person tutorials that they and the other authors have been giving […] The post New Book: Bayesian Data Analysis in Ecology Using Linear Models with R,…

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Summer Internship at Novartis: Stan PK/PD Modeling

April 11, 2015
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Summer Internship at Novartis:  Stan PK/PD Modeling

This looks like a great way to spend a summer: Summer Internship at Novartis Integrated Quantitative Sciences Here’s the job description: Bayesian modeling tools with Stan: Create re-usable tools for the Bayesian modeling of pharmacometrics data that can integrate diverse data sources (including pre-clinical, in-silico model predictions, etc.). Using the latest Stan’s facilities (http://mc-stan.org) develop […] The post Summer Internship at Novartis: Stan PK/PD Modeling appeared first on Statistical Modeling,…

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What do CERN, the ISS, and Stephen Fry have in Common?

March 18, 2015
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What do CERN, the ISS, and Stephen Fry have in Common?

You’ll have to read the New Yorker article on Richard M. Stallman and the The GNU Manifesto by Maria Bustillos to find out! And what’s up with Tim O’Reilly’s comments about the Old Testment vs. New Testament?   That’s an ad hominem attack of the highest order, guaranteed to get the Judeo-Christians even more riled […] The post What do CERN, the ISS, and Stephen Fry have in Common? appeared…

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Stan Down Under

February 15, 2015
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Stan Down Under

I (Bob, not Andrew) am in Australia until April 30. I’ll be giving some Stan-related and some data annotation talks, several of which have yet to be concretely scheduled. I’ll keep this page updated with what I’ll be up to. All of the talks other than summer school will be open to the public (the […] The post Stan Down Under appeared first on Statistical Modeling, Causal Inference, and Social…

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Stan 2.6.0 Released

February 12, 2015
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Stan 2.6.0 Released

We’re happy to announce the release of Stan 2.6, including RStan, PyStan, CmdStan; it will also work with the existing Stan.jl and MatlabStan. Although there is some new functionality (hence the minor version bump), this is primarily a maintenance release. It fixes all of the known memory issues with Stan 2.5.0 and improves overall speed […] The post Stan 2.6.0 Released appeared first on Statistical Modeling, Causal Inference, and Social…

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Stan 2.6.0 Released

February 12, 2015
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Stan 2.6.0 Released

We’re happy to announce the release of Stan 2.6, including RStan, PyStan, CmdStan; it will also work with the existing Stan.jl and MatlabStan. Although there is some new functionality (hence the minor version bump), this is primarily a maintenance release. It fixes all of the known memory issues with Stan 2.5.0 and improves overall speed […] The post Stan 2.6.0 Released appeared first on Statistical Modeling, Causal Inference, and Social…

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Bayesian Cognitive Modeling Models Ported to Stan

December 9, 2014
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Hats off for Martin Šmíra, who has finished porting the models from Michael Lee and Eric-Jan Wagenmakers’ book Bayesian Cognitive Modeling  to Stan. Here they are: Bayesian Cognitive Modeling: Stan Example Models Martin managed to port 54 of the 57 models in the book and verified that the Stan code got the same answers as […] The post Bayesian Cognitive Modeling Models Ported to Stan appeared first on Statistical Modeling,…

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Soil Scientists Seeking Super Model

November 20, 2014
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Soil Scientists Seeking Super Model

I (Bob) spent last weekend at Biosphere 2, collaborating with soil carbon biogeochemists on a “super model.” Model combination and expansion The biogeochemists (three sciences in one!) have developed hundreds of competing models and the goal of the workshop was to kick off some projects on putting some of them together intos wholes that are […] The post Soil Scientists Seeking Super Model appeared first on Statistical Modeling, Causal Inference,…

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No, Michael Jordan didn’t say that!

October 23, 2014
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The names are changed, but the song remains the same. First verse. There’s an article by a journalist, The odds, continually updated, by F.D. Flam in the NY Times to which Andrew responded in blog form, No, I didn’t say that, by Andrew Gelman, on this blog. Second verse. There’s an article by a journalist, […] The post No, Michael Jordan didn’t say that! appeared first on Statistical Modeling, Causal…

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Stan 2.5, now with MATLAB, Julia, and ODEs

October 22, 2014
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Stan 2.5, now with MATLAB, Julia, and ODEs

As usual, you can find everything on the Stan Home Page. Drop us a line on the stan-users group if you have problems with installs or questions about Stan or coding particular models. New Interfaces We’d like to welcome two new interfaces: MatlabStan by Brian Lau, and  Stan.jl (for Julia) by Rob Goedman. The new […] The post Stan 2.5, now with MATLAB, Julia, and ODEs appeared first on Statistical…

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