Posts Tagged ‘ Tutorials ’

On Nested Models

April 26, 2016
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On Nested Models

We have been recently working on and presenting on nested modeling issues. These are situations where the output of one trained machine learning model is part of the input of a later model or procedure. I am now of the opinion that correct treatment of nested models is one of the biggest opportunities for improvement … Continue reading On Nested Models

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Improved vtreat documentation

April 17, 2016
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Improved vtreat documentation

Nina Zumel has donated some time to greatly improve the vtreat R package documentation (now available as pre-rendered HTML here). vtreat is an R data.frame processor/conditioner package that helps prepare real-world data for predictive modeling in a statistically sound manner. Even with modern machine learning techniques (random forests, support vector machines, neural nets, gradient boosted … Continue reading Improved vtreat documentation

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A bit on the F1 score floor

April 2, 2016
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A bit on the F1 score floor

At Strata+Hadoop World “R Day” Tutorial, Tuesday, March 29 2016, San Jose, California we spent some time on classifier measures derived from the so-called “confusion matrix.” We repeated our usual admonition to not use “accuracy itself” as a project quality goal (business people tend to ask for it as it is the word they are … Continue reading A bit on the F1 score floor

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WVPlots: example plots in R using ggplot2

April 1, 2016
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WVPlots: example plots in R using ggplot2

Nina Zumel and I have been working on packaging our favorite graphing techniques in a more reusable way that emphasizes the analysis task at hand over the steps needed to produce a good visualization. The idea is: we sacrifice some of the flexibility and composability inherent to ggplot2 in R for a menu of prescribed … Continue reading WVPlots: example plots in R using ggplot2

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Upcoming Win-Vector LLC appearances

March 23, 2016
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Upcoming Win-Vector LLC appearances

Win-Vector LLC will be presenting on statistically validating models using R and data science at: Strata+Hadoop World “R Day” Tutorial 9:00am–5:00pm Tuesday, March 29 2016, San Jose, California. ODSC San Francisco Meetup, 6:30pm-9:00pm Thursday, March 31, 2016, San Francisco, California. We will share code and examples. Registration required (and Strata is a paid conference). Please … Continue reading Upcoming Win-Vector LLC appearances

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More on preparing data

March 18, 2016
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More on preparing data

The Microsoft Data Science User Group just sponsored Dr. Nina Zumel‘s presentation “Preparing Data for Analysis Using R”. Microsoft saw Win-Vector LLC‘s ODSC West 2015 presentation “Prepping Data for Analysis using R” and generously offered to sponsor improving it and disseminating it to a wider audience. We feel Nina really hit the ball out of … Continue reading More on preparing data

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Neglected optimization topic: set diversity

February 8, 2016
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Neglected optimization topic: set diversity

The mathematical concept of set diversity is a somewhat neglected topic in current applied decision sciences and optimization. We take this opportunity to discuss the issue. The problem Consider the following problem: for a number of items U = {x_1, … x_n} pick a small set of them X = {x_i1, x_i2, ..., x_ik} such … Continue reading Neglected optimization topic: set diversity

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Prepping Data for Analysis using R

January 20, 2016
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Prepping Data for Analysis using R

Nina and I are proud to share our lecture: “Prepping Data for Analysis using R” from ODSC West 2015. Nina Zumel and John Mount ODSC WEST 2015 It is about 90 minutes, and covers a lot of the theory behind the vtreat data preparation library. We also have a Github repository including all the lecture … Continue reading Prepping Data for Analysis using R

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Using Excel versus using R

January 15, 2016
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Here is a video I made showing how R should not be considered “scarier” than Excel to analysts. One of the takeaway points: it is easier to email R procedures than Excel procedures. Win-Vector’s John Mount shows a simple analysis both in Excel and in R. A save of the “email” linking to all code … Continue reading Using Excel versus using R

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Tutorial: RNA-seq differential expression & pathway analysis with Sailfish, DESeq2, GAGE, and Pathview

December 4, 2015
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BackgroundThis tutorial shows an example of RNA-seq data analysis with DESeq2, followed by KEGG pathway analysis using GAGE. Using data from GSE37704, with processed data available on Figshare DOI: 10.6084/m9.figshare.1601975. This dataset has six samp...

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