Posts Tagged ‘ R ’

Generating a Markov chain vs. computing the transition matrix

May 23, 2013
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Generating a Markov chain vs. computing the transition matrix

A couple of days ago, we had a quick chat on Karl Broman‘s blog, about snakes and ladders (see http://kbroman.wordpress.com/…) with Karl and Corey (see http://bayesianbiologist.com/….), and the use of Markov Chain. I do believe that this application is truly awesome: the example is understandable by anyone, and computations (almost any kind, from what we’ve tried) are easy to perform. At the same time, some French students asked me specific details regarding…

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R/Finance 2013 slides

May 20, 2013
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R/Finance 2013 slides

I have just returned from the R/Finance conference and want to share with you my slides and examples. The Cluster Risk Parity portfolio allocation method is an example of Cluster Portfolio Allocation methods that focuses on diversification or more specifically diversification of your risk bets. (i.e. portfolio that distributes risk equally both within clusters and […]

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More on Chutes & Ladders

May 20, 2013
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More on Chutes & Ladders

Matt Maenner asked about the sawtooth pattern in the figure in my last post on Chutes & Ladders. Damn you, Matt! I thought I was done with this. Don’t feed my obsession. My response was that if the game ends early, it’s even more likely that it’ll be the kid who went first who won. […]

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qdap 0.2.2 released

May 20, 2013
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qdap 0.2.2 released

I’m very pleased to announce the release of qdap 0.2.2 This is the third installment of the qdap package available at CRAN. The qdap package automates many of the tasks associated with quantitative discourse analysis of transcripts containing discourse, including … Continue reading →

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Playing cards in Vegas?

May 20, 2013
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Playing cards in Vegas?

In a previous post, a few weeks ago, I mentioned that I will be in Las Vegas by the end of July. And I took the opportunity to write a post on roulette(s). Since some colleagues told me I should take some time to play poker there, I guess I have to understand how to play poker… so I went back to basics on cards, and shuffling techniques. Now, I…

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Exploratory Data Analysis of Ozone Pollution in New York City – Descriptive Statistics

May 19, 2013
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Exploratory Data Analysis of Ozone Pollution in New York City – Descriptive Statistics

Introduction This is the first of a series of posts on exploratory data analysis (EDA).  This post will calculate the common summary statistics of a univariate continuous data set – the data on ozone pollution in New York City that is part of the built-in “CO2″ data set in R.  This is a particularly good data set […]

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Sharing my R notes

May 19, 2013
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Sharing my R notes

I started working with R 2 1/2 years ago. I remember opening R closing it and thinking it was the dumbest thing ever (command line to a non programmer is not inviting). Now it’s my constant friend. From the beginning … Continue reading →

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Chutes & ladders: How long is this going to take?

May 17, 2013
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Chutes & ladders: How long is this going to take?

I was playing Chutes & Ladders with my four-year-old daughter yesterday, and I thought, “How long is this going to take?” I saw an interesting mathematical analysis of the game a few years ago, but it seems to be offline, though you can read it via the wayback machine. But that didn’t answer my specific […]

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Analyzing a simple experiment with heterogeneous variances using asreml, MCMCglmm and SAS

May 17, 2013
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Analyzing a simple experiment with heterogeneous variances using asreml, MCMCglmm and SAS

I was working with a small experiment which includes families from two Eucalyptus species and thought it would be nice to code a first analysis using alternative approaches. The experiment is a randomized complete block design, with species as fixed … Continue reading →

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Automated Archival and Visual Analysis of Tweets Mentioning #bog13, Bioinformatics, #rstats, and Others

May 15, 2013
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Automated Archival and Visual Analysis of Tweets Mentioning #bog13, Bioinformatics, #rstats, and Others

Automatically Archiving Twitter Results Ever since Twitter gamed its own API and killed off great services like IFTTT triggers, I've been looking for a way to automatically archive tweets containing certain search terms of interest to me. Twitter's bu...

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