Feedback on my Bayesian Data Analysis class at Columbia

December 7, 2012
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(This article was originally published at Statistical Modeling, Causal Inference, and Social Science, and syndicated at StatsBlogs.)

In one of the final Jitts, we asked the students how the course could be improved. Some of their suggestions would work, some would not. I’m putting all the suggestions below, interpolating my responses. (Overall, I think the course went well. Please remember that the remarks below are not course evaluations; they are answers to my specific question of how the course could be better. If we’d had a Jitt asking all the ways the course was good, you’d be seeing lots of positive remarks. But that wouldn’t be particularly useful or interesting.) The best thing about the course is that the kids worked hard each week on their homeworks.

OK, here are the comments and my replies:

Could have been better if we did less amount but more in detail.

I don’t know if this would’ve been possible. I wanted to get to the harder stuff (HMC, VB, nonparametric models) which required a certain amount of preparation. And, even so, there was not time for everything.

And also, needs solution for the homeworks.

Nope. I never hand out homework solutions. I much prefer for students to make corrections on their own homeworks. We discussed the solutions each week when we returned the graded papers to the students, but maybe we should have spent more time on that.

I think the class should have a lab session, in which we spend more time going over the homework and the R/stan code.

I agree! A weekly section would’ve been great. For some reason this rarely seems to be done at Columbia, and it’s always difficult to schedule these. But I’ll try again next time.

Maybe a couple of classes on Welcome to Stan.

Better to do in the (hypothetical) section meetings, I think; see comment immediately above.

More developed calculus on the board.

Maybe a little bit more, but I think that a better solution to this problem (students not following the math) would be to have some additional hwks that are relatively easy in which student are required to derive various formulas that are analogous to computations in the book. For example, working on the 8-schools-like algebra for a Poisson-gamma model.

How to choose different models to suit different real-word questions.

I thought we talked about that a lot! But maybe I didn’t offer enough general guidance. Also we didn’t have enough followup on the applied homework questions.

I hope to know more about the history and philosophical consideration of Bayes analysis. How Bayes conflict and interact with frequantists’ methods.

The revised Chapter 4 will help with this.

cannot review ppt in time because ppt is not uploaded in time. cannot write the detailed algorithms. cannot understand all the reading material and do not have time to understand them.

No! I will never post the slides before the class meetings. That’s a disaster, as it encourages students to read the slides rather than the book. You have to read the book, you can’t learn the material from the slides. If the book is too hard for you, maybe you should be taking an easier class.

It would have been better if we can have a chance to make up some missing homework questions.

Overall I was happy with students’ effort level on the homework assignments and would be reluctant to change what we did regarding due dates etc.

Although some questions are repeated later in the other problem sets, I sometimes missed some parts but didn’t have any chance or motivation to recover them.

I had time allocated at the end of class each week to discuss the upcoming homework. Often I didn’t get to that, though. In retrospect I should’ve skipped whatever during the lecture to make sure to spend a few minutes each week on this preparatory overview.

While the subject matter was very interesting, I would have preferred to have a few more derivations and examples in class. It felt like there was a disconnect between the lectures and the homework.

As noted above, I think the course could benefit from the addition of some more basic homeworks in which students learn the key derivations in each chapter.

Some homework solution or example of R-code were given, it would be better since although I fnished homework, I want to know the proper answer or example for future study

I think the solution here is not to hand out homework solutions but to do a better job with the in-class homework review. Also if we had weekly sections, the T.A. could review the past homework more carefully.

The book draft is not quite clear on some of the materials in the last few lectures and understandable information online is hard to obtain, e.g. variational Bayes and Bayesian spline regression. But overall, I learned tons of stuff and it’s a great experience.

The final version of the book should be cleaner.

difference between bayesian method and non-bayesian method.

The new Chapter 4 has some of this. But we try not to spend too much time on this; the assumption is that if you’re taking a course on Bayesian data analysis, that you’re wanting to learn this stuff for itself rather than as a comparison to anything else.

More about stan!

Stan is great but we already have so much on computation and we only have a fixed amount of time in the class.

Taking a closer look at why Metropolis and HMC work; but I guess we’ll do that in the computing course.

Again, it’s a tough tradeoff. I wanted to make sure all the students learned to program these methods but there’s no time for everything. Given the choice of only the theory or only the programming experience, I wanted to give the latter.

I think this course pretty much cover almost all the important and technical part in applied Bayesian analysis. (Probably it would be nice to have a short analytic works that we attempt to apply in our own field based on what we have learned so far.)

I did find that we did better job at teaching Bayes than with teaching the principles of applied statistics more generally. There was an applied homework assignment each week but we really have a chance to explore these problems in depth. Maybe it would be better to have fewer, more serious, applied assignments.

Time for digesting the things we learn

Now that the semester is over, you have lots of time to digest!

I think that the homeworks could have built upon each other much better. One simple way to do this is to suggest ways to design our functions for future use, so that by the end of the course we had a library of Bayesian tools.

Good idea. This could also be done in conjunction with weekly section meetings.

I felt like I was missing a lot of background, and I would have appreciated guidance about what I could do to gain the background knowledge that I felt was missing. I would also have appreciated greater help with R. It was easy to learn the basics, but very, very difficult to do more advanced things.

Again, this could happen in the section meetings.

Basic computational and regression methods.

A couple years ago I taught a two-semester applied stat PhD sequence out of ARM in the fall and BDA in the spring. I thought this made sense, but the first-year stat PhD students seemed to feel that ARM was too easy.

I don’t think preview a chapter and do the homeworks before that class is efficient.

Adding some easier homeworks each week to get students to understand the basic derivations, that would help.

nothing, just too much is covered

Yeah, I understand . . . but I would’ve felt awkward not covering topics such as VB and nonparametrics; these are not my area of expertise but they are important, especially going forward in the research direction.

I would have appreciated 3 things. First, more of a focus on selecting priors. Second, a focus on coding. The appendices on coding HMC and metropolis were incredibly helpful. Considering clean, correct code was never posted for any problem set, any errors I made over the semester kept snowballing and I was never able to learn the proper code. It is not feasible to ask detailed questions about code in class or in office hours. Finally, I would have appreciated more of a focus on hierarchical regressions. Chapter 5 was the most important to me in the course and was briefly considered. The chapter on Hierarchical regression models was completely skipped. There is far too much attention to computation and far too little paid to the substantive benefits and uses of bayesian analysis.

For the first part, I think the focus should be on constructing models, not selecting priors. I say “constructing” (rather than “selecting”) to denote an active process, and of course it is the whole model that must be built (or chosen), not just the prior distribution. I’ll need to make this point clearer next time. Maybe also it could be made clearer in the book. There’s a tendency in statistics teaching to just accept a data model without question and then go on to prior distributions and estimations from there, but that’s not right. It’s rare that a data model is known a priori.

Regarding the student’s other comments, I think we could do better by covering more of the details of coding during section meetings. Beyond that, I’m wary of talking too much about “the substantive benefits and uses of bayesian analysis.” You have to learn by doing.



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